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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183698224_183699049_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
183698224 - 183699049
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AAATGATTATTT
Flanking Amino Acid:
IFWLRPTYPKDKQRERREMK
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
84
0.77
0.8
81.4
36.2
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
44.6
-0.3
2.1
61.77
42

Associated Gene:

Gene:
CNMD
Ensembl Gene ID:
ENSAPLG00000024638
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037436
183695948 - 183704664
8717