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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183699204_183702220_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183699204 - 183702220
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
ACTTGATTAAAC
Flanking Amino Acid:
MTKASLSSDLEDEIMPVRFD
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
75
0.62
1
65.3
41.5
Major PPT
76
0.59
0.8
70.1
29.6
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
49
-0.1
2.1
63.25
41.9

Associated Gene:

Gene:
CNMD
Ensembl Gene ID:
ENSAPLG00000024638
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037436
183695948 - 183704664
8717