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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183702335_183703807_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
183702335 - 183703807
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCTGTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAA
U12 Branch Point Sequence:
AGTGCTCTATTT
Flanking Amino Acid:
EAVEVHDFQIGITGIRFAEG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
61.8
0.29
1.1
63.4
35.6
Major PPT
80.8
0.69
0.8
76.3
32.3
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
45.7
-0.2
1.9
63.4
41.4

Associated Gene:

Gene:
CNMD
Ensembl Gene ID:
ENSAPLG00000024638
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037436
183695948 - 183704664
8717