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Intron Name: Anas_platyrhynchos_platyrhynchos_1_183726583_183727043_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

183726583 - 183727043

Intron Length:

461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGAGT

5'SS Class:

strong_major

3'SS Sequence:

TCGCTCCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

CCTGCAGTAACC

Flanking Amino Acid:

KKDLITHMQNGLWACTAECK

Intron Amino Acid Position:

875

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

75.2

40.6

Major BPS

54.4

0.11

1.2

36.4

Major PPT

71.2

0.48

0.8

62.6

34.6

Minor 5ss

34.1

-1.8

3.3

45.5

44.6

Minor BPS

45.8

-0.3

2.3

58.79

46.4

Associated Gene:

Gene:

PCDH8

Ensembl Gene ID:

ENSAPLG00000027530

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033093

183725792 - 183729809

4018