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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183769536_183820427_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
183769536 - 183820427
Intron Length:
50892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAGTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.8
0.76
0.7
82
29.1
Minor 5ss
38.3
-1.3
2.8
40.5
45.5
Minor BPS
54.2
0.21
1.5
66.44
39.1

Associated Gene:

Gene:
OLFM4
Ensembl Gene ID:
ENSAPLG00000028342
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045322
183768666 - 183842335
73670