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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18383557_18384694_F

Intron Information:

Intron Rank:
140952
Intron Class:
major
Intron Phase:
Intron Coordinates:
18383557 - 18384694
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATGACT
5'SS Class:
major
3'SS Sequence:
ACATCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ACTTTCATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
71.7
37.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.4
0.55
0.9
70.6
39
Minor 5ss
36.7
-1.5
3.2
50.5
39.9
Minor BPS
57.8
0.11
1.7
62.01
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025895
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032729
18383157 - 18387884
4728