Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183874407_183876748_F

Intron Information:

Intron Rank:

134118

Intron Class:

major

Intron Phase:

Intron Coordinates:

183874407 - 183876748

Intron Length:

2342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TTCCACACTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TCTTCCACACTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

78.2

36.4

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

69.4

0.44

0.8

62.6

32.9

Minor 5ss

40.6

-1

3.4

45.5

Minor BPS

47.5

-0.1

2.1

64.29

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022087

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029528

183874105 - 183877492

3388