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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183874407_183883508_F

Intron Information:

Intron Rank:
134122
Intron Class:
major
Intron Phase:
Intron Coordinates:
183874407 - 183883508
Intron Length:
9102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TTTTTCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
64.2
0.52
1.9
88.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031588
183874105 - 183888314
14210
ENSAPLT00000046898
183874105 - 183884120
10016
ENSAPLT00000041549
183874105 - 183884628
10524