About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183876854_183883508_F

Intron Information:

Intron Rank:
134121
Intron Class:
major
Intron Phase:
Intron Coordinates:
183876854 - 183883508
Intron Length:
6655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TTTTTCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.4
30.3
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
34
-1.8
2.9
41.9
44.8
Minor BPS
64.2
0.52
1.9
88.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022087
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030634
183874105 - 183883631
9527