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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183928366_183929060_F

Intron Information:

Intron Rank:
125983
Intron Class:
major
Intron Phase:
Intron Coordinates:
183928366 - 183929060
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAAATTA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
72.3
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.7
80.6
31.5
Minor 5ss
37.2
-1.4
3.1
48.1
47.4
Minor BPS
66.3
0.49
1.5
73.61
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022890
183926866 - 183931971
5106