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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183928838_183929060_F

Intron Information:

Intron Rank:
125990
Intron Class:
major
Intron Phase:
Intron Coordinates:
183928838 - 183929060
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.7
80.6
31.5
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
66.3
0.49
1.5
73.61
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041569
183928834 - 183931971
3138