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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183929102_183929626_F

Intron Information:

Intron Rank:
125984
Intron Class:
major
Intron Phase:
Intron Coordinates:
183929102 - 183929626
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
ATTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GGTATTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
82.9
0.74
0.9
77.3
36.3
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
49.8
0.07
1.6
66.77
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041569
183928834 - 183931971
3138
ENSAPLT00000032214
183928261 - 183931971
3711
ENSAPLT00000022890
183926866 - 183931971
5106