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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183929102_183931737_F

Intron Information:

Intron Rank:
125981
Intron Class:
major
Intron Phase:
Intron Coordinates:
183929102 - 183931737
Intron Length:
2636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
TGTTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGTCCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.9
0.52
0.9
65.6
41
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
54.2
0.21
1.8
73.64
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019443
183928261 - 183931971
3711