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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183929650_183931737_F

Intron Information:

Intron Rank:
125985
Intron Class:
major
Intron Phase:
Intron Coordinates:
183929650 - 183931737
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGTCCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.9
0.52
0.9
65.6
41
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
54.2
0.21
1.8
73.64
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017868
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041569
183928834 - 183931971
3138
ENSAPLT00000032214
183928261 - 183931971
3711
ENSAPLT00000022890
183926866 - 183931971
5106