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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183977480_183978551_F

Intron Information:

Intron Rank:
143509
Intron Class:
major
Intron Phase:
Intron Coordinates:
183977480 - 183978551
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTTAACTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
64.2
0.32
1.7
77
31.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
54.5
0.12
1.7
66.42
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034356
183970508 - 183992052
21545
ENSAPLT00000029637
183977368 - 183994723
17356
ENSAPLT00000028143
183967508 - 183981345
13838