About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183978804_183991608_F

Intron Information:

Intron Rank:
143516
Intron Class:
major
Intron Phase:
Intron Coordinates:
183978804 - 183991608
Intron Length:
12805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GCCATTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.8
0.42
0.9
60.8
40.1
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
59
0.14
1.6
63.7
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029637
183977368 - 183994723
17356