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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183979242_183981154_F

Intron Information:

Intron Rank:
143511
Intron Class:
major
Intron Phase:
Intron Coordinates:
183979242 - 183981154
Intron Length:
1913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.9
0.76
0.7
80.9
24.3
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028143
183967508 - 183981345
13838