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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_183990679_183991608_F

Intron Information:

Intron Rank:
143512
Intron Class:
major
Intron Phase:
Intron Coordinates:
183990679 - 183991608
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATGC
5'SS Class:
major
3'SS Sequence:
GCCATTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.8
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.8
0.42
0.9
60.8
40.1
Minor 5ss
38.4
-1.3
3
51.4
45.1
Minor BPS
59
0.14
1.6
63.7
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034356
183970508 - 183992052
21545
ENSAPLT00000029021
183989912 - 183994723
4812