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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184028991_184030993_R

Intron Information:

Intron Rank:
155356
Intron Class:
major
Intron Phase:
Intron Coordinates:
184028991 - 184030993
Intron Length:
2003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATGTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
44.3
-0.4
2.2
59.96
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037925
184027711 - 184033838
6128