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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184031055_184034747_F

Intron Information:

Intron Rank:
125728
Intron Class:
major
Intron Phase:
Intron Coordinates:
184031055 - 184034747
Intron Length:
3693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
63.9
38
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
77.5
0.62
1
75.9
38.4
Minor 5ss
25.4
-2.8
2.8
22
37
Minor BPS
60.5
0.18
2
72.05
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034126
184030304 - 184042086
11783