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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184034815_184041869_F

Intron Information:

Intron Rank:
125729
Intron Class:
major
Intron Phase:
Intron Coordinates:
184034815 - 184041869
Intron Length:
7055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTGTATCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
64.9
41.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
34.6
-1.7
3.4
43.3
45.4
Minor BPS
56.3
0.28
1.8
77.38
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034126
184030304 - 184042086
11783