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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184310833_184311015_R

Intron Information:

Intron Rank:
138171
Intron Class:
major
Intron Phase:
Intron Coordinates:
184310833 - 184311015
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTTCTGAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.4
0.66
0.9
77.9
36.6
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
49.5
0.04
2.3
73.4
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021855
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019401
184310549 - 184311500
952
ENSAPLT00000038457
184310549 - 184311500
952
ENSAPLT00000025641
184310549 - 184318681
8133