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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184311128_184311216_R

Intron Information:

Intron Rank:
138172
Intron Class:
major
Intron Phase:
Intron Coordinates:
184311128 - 184311216
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGGGTCTG
5'SS Class:
major
3'SS Sequence:
GCTCTCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGACCAGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.1
53.8
45
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.5
0.6
0.9
69.1
35.7
Minor 5ss
33.2
-1.9
3.3
45.8
43.4
Minor BPS
48.7
-0
1.8
66.61
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021855
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019401
184310549 - 184311500
952