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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184331817_184332934_F

Intron Information:

Intron Rank:
127327
Intron Class:
major
Intron Phase:
Intron Coordinates:
184331817 - 184332934
Intron Length:
1118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TCTATTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCCCTTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.2
32.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.8
0.63
0.8
69.7
36.6
Minor 5ss
34.1
-1.8
2.9
47.9
41.8
Minor BPS
48.7
-0
1.8
69.37
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018657
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040344
184330952 - 184333827
2876