Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184336750_184341803_R

Intron Information:

Intron Rank:

133468

Intron Class:

major

Intron Phase:

Intron Coordinates:

184336750 - 184341803

Intron Length:

5054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTTCTT

5'SS Class:

major

3'SS Sequence:

TCTGTCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATAAA

U12 Branch Point Sequence:

AAATATCTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.1

74.6

41.7

Major BPS

60.9

0.27

1.3

64.3

39.6

Major PPT

86.8

0.83

0.7

84.4

30.5

Minor 5ss

38.8

-1.3

3.4

58.7

45.8

Minor BPS

44.6

-0.3

62.39

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041237

184336537 - 184343758

7222

ENSAPLT00000032271

184336537 - 184355314

18778