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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184341937_184342978_R

Intron Information:

Intron Rank:
133469
Intron Class:
major
Intron Phase:
Intron Coordinates:
184341937 - 184342978
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTCGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
ATTTCAGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
68
0.41
1
60.7
40.3
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
52.7
0.08
2.3
74.04
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019071
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041237
184336537 - 184343758
7222
ENSAPLT00000032271
184336537 - 184355314
18778