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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184343409_184355222_R

Intron Information:

Intron Rank:
133470
Intron Class:
major
Intron Phase:
Intron Coordinates:
184343409 - 184355222
Intron Length:
11814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.8
0.53
1
72.7
32.5
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019071
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032271
184336537 - 184355314
18778