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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184395174_184396403_R

Intron Information:

Intron Rank:
129526
Intron Class:
major
Intron Phase:
Intron Coordinates:
184395174 - 184396403
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGGCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
58.9
0.36
1.7
74.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022316
184390796 - 184396964
6169
ENSAPLT00000039033
184390796 - 184397550
6755