About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184406812_184409384_R

Intron Information:

Intron Rank:
134573
Intron Class:
major
Intron Phase:
Intron Coordinates:
184406812 - 184409384
Intron Length:
2573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGGTGTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80
0.68
0.9
75.7
38
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
46.8
-0.1
2.4
70.44
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030255
184406665 - 184413392
6728