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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_184412294_184413325_F

Intron Information:

Intron Rank:
136363
Intron Class:
major
Intron Phase:
Intron Coordinates:
184412294 - 184413325
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTACCTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
80.6
0.69
0.8
77.3
31.1
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
66.7
0.5
1.7
75.08
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023482
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020738
184411449 - 184413336
1888