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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18500456_18557601_R

Intron Information:

Intron Rank:
143619
Intron Class:
major
Intron Phase:
Intron Coordinates:
18500456 - 18557601
Intron Length:
57146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.5
0.71
0.9
78.1
40.1
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
64.3
0.53
1.4
82.65
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024604
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028430
18498775 - 18568469
69695