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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18513314_18557601_R

Intron Information:

Intron Rank:
143622
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18513314 - 18557601
Intron Length:
44288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATATCTGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
AGTCTCTGATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
79
0.72
1
69
38.9
Major PPT
58.2
0.18
1.2
50.7
47.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
46.1
-0.2
1.7
63.03
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024604
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043929
18512910 - 18568469
55560