About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_185216062_185216617_R


Intron Information:

Intron Rank:
148935

Intron Class:
major

Intron Phase:

Intron Coordinates:
185216062 - 185216617

Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAT|GTGAATGCA

5'SS Class:
major

3'SS Sequence:
TATTTTGTCTTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATATAT

U12 Branch Point Sequence:
ATATATATATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.9
0.47
1.1
66.5
32.3

Major BPS
71.4
0.53
1
67.3
39.3

Major PPT
78.1
0.63
0.9
77.4
36.6

Minor 5ss
29.3
-2.4
3.2
36.4
40.9

Minor BPS
45.6
-0.2
1.9
65.18
39.4

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

185215765 - 185216744
980