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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1852411_1855867_F

Intron Information:

Intron Rank:
126595
Intron Class:
major
Intron Phase:
Intron Coordinates:
1852411 - 1855867
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAATTTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.5
0.66
0.8
72.8
37.5
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
48.8
-0.2
2
56.34
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023045
1852302 - 1861428
9127