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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_185363289_185363480_R

Intron Information:

Intron Rank:
149992
Intron Class:
major
Intron Phase:
Intron Coordinates:
185363289 - 185363480
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGGAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
AGCTCTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
71.5
39.8
Major BPS
74
0.6
1
65.6
41.1
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
31
-2.2
3.3
44.2
43.7
Minor BPS
58.7
0.35
1.6
70.39
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035732
185362782 - 185374199
11418