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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_185363594_185373542_R

Intron Information:

Intron Rank:
149993
Intron Class:
major
Intron Phase:
Intron Coordinates:
185363594 - 185373542
Intron Length:
9949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TGCTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTCCATTTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
80.2
0.68
0.8
73
37.4
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
56.7
0.19
1.9
73.68
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035732
185362782 - 185374199
11418