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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1854494_1855867_F

Intron Information:

Intron Rank:
126598
Intron Class:
major
Intron Phase:
Intron Coordinates:
1854494 - 1855867
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATGA
5'SS Class:
major
3'SS Sequence:
CTTTTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAATTTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
42
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.5
0.66
0.8
72.8
37.5
Minor 5ss
41.8
-0.9
3.2
57
47.1
Minor BPS
48.8
-0.2
2
56.34
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029000
1854161 - 1861428
7268