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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_185891735_185897586_R

Intron Information:

Intron Rank:
135203
Intron Class:
major
Intron Phase:
Intron Coordinates:
185891735 - 185897586
Intron Length:
5852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
54
0.21
1.8
77.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018483
185882930 - 185897800
14871