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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186052791_186052934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
186052791 - 186052934
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
ATATGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTTAAAT
Flanking Amino Acid:
YMGSRQQFVQSSSTFKDPER
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75
0.56
1
71.1
43.4
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
65.7
0.57
1.4
75.95
41.3

Associated Gene:

Gene:
PCDH17
Ensembl Gene ID:
ENSAPLG00000014071
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035375
186026551 - 186110623
84073
ENSAPLT00000014655
186026551 - 186110623
84073