Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186053108_186102673_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

186053108 - 186102673

Intron Length:

49566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GATTTGCCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

CTGTCTGTGACT

Flanking Amino Acid:

TSTKSQPLEQEQQGRGQRPI

Intron Amino Acid Position:

950

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.99

0.7

82.8

23.2

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

73.4

0.53

62.8

43.9

Minor 5ss

26.6

-2.7

30.8

43.1

Minor BPS

54.4

0.22

2.1

74.14

43.6

Associated Gene:

Gene:

PCDH17

Ensembl Gene ID:

ENSAPLG00000014071

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035375

186026551 - 186110623

84073