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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186102749_186109838_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
186102749 - 186109838
Intron Length:
7090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACTAGAGT
Flanking Amino Acid:
PARCEDGKFSEQEECVNCTD
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
45
-0.3
2.1
65.82
44.5

Associated Gene:

Gene:
PCDH17
Ensembl Gene ID:
ENSAPLG00000014071
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035375
186026551 - 186110623
84073