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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186111935_186113242_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
186111935 - 186113242
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGT|GCAAGTCCT
5'SS Class:
major
3'SS Sequence:
TATATGTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTGTACAATT
Flanking Amino Acid:
PTNTSISHGYVHKPTIF*
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.4
72.6
38
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
65.3
0.34
1.1
64.6
41.2
Minor 5ss
28.5
-2.5
4
43.6
43.3
Minor BPS
44.6
-0.3
2.1
64.7
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024312
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025903
186111714 - 186113264
1551