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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186145325_186153868_F

Intron Information:

Intron Rank:
144251
Intron Class:
major
Intron Phase:
Intron Coordinates:
186145325 - 186153868
Intron Length:
8544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TCTCTGCTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
39.8
-0.9
2.4
48.51
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027776
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033264
186145250 - 186154073
8824