Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186153981_186156449_F

Intron Information:

Intron Rank:

144253

Intron Class:

major

Intron Phase:

Intron Coordinates:

186153981 - 186156449

Intron Length:

2469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGTT

U12 Branch Point Sequence:

GTTTCTTTGTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

27.5

Major BPS

38.1

-0.7

4.3

71.4

45.1

Major PPT

90.2

0.9

0.7

88.4

28.7

Minor 5ss

38.8

-1.3

3.2

57.6

46.6

Minor BPS

47.1

-0.1

3.4

79.17

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027776

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035857

186137647 - 186156534

18888