Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186498601_186502751_R

Intron Information:

Intron Rank:

139042

Intron Class:

major

Intron Phase:

Intron Coordinates:

186498601 - 186502751

Intron Length:

4151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGGC

5'SS Class:

major

3'SS Sequence:

ATTCTCATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

AAGGATTTAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

60.3

39.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

80.1

0.68

0.9

39.1

Minor 5ss

28.9

-2.4

3.1

36.6

Minor BPS

52.8

0.07

1.6

58.67

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022290

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027301

186498444 - 186504728

6285