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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186530709_186538450_R

Intron Information:

Intron Rank:
141348
Intron Class:
major
Intron Phase:
Intron Coordinates:
186530709 - 186538450
Intron Length:
7742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84.4
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.8
0.7
80.7
30.7
Minor 5ss
33.8
-1.8
2.6
44.2
43
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023386
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032830
186530174 - 186552379
22206