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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186539911_186552296_R

Intron Information:

Intron Rank:
141350
Intron Class:
major
Intron Phase:
Intron Coordinates:
186539911 - 186552296
Intron Length:
12386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGCAG
5'SS Class:
major
3'SS Sequence:
CACTCTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATGTCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
55.1
43.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.5
0.62
0.8
72.7
31.7
Minor 5ss
30.3
-2.3
3.2
35.4
42.3
Minor BPS
67
0.62
1.7
81.85
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023386
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032830
186530174 - 186552379
22206