About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186539911_186622208_R

Intron Information:

Intron Rank:
141347
Intron Class:
major
Intron Phase:
Intron Coordinates:
186539911 - 186622208
Intron Length:
82298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CACTCTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATGTCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.7
38.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.5
0.62
0.8
72.7
31.7
Minor 5ss
36.3
-1.6
3.3
50.8
41.1
Minor BPS
67
0.62
1.7
81.85
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023386
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031547
186530174 - 186622295
92122