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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186725695_186727696_R

Intron Information:

Intron Rank:
149684
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
186725695 - 186727696
Intron Length:
2002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACTATCT
5'SS Class:
major
3'SS Sequence:
CTTGGACACCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTCTTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
60.8
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
57.5
0.17
1
48.1
39.8
Minor 5ss
39.7
-1.2
3.3
54.8
44.2
Minor BPS
65.9
0.49
1.5
74.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028960
186721485 - 186728121
6637