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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_186729077_186734466_R

Intron Information:

Intron Rank:
138126
Intron Class:
major
Intron Phase:
Intron Coordinates:
186729077 - 186734466
Intron Length:
5390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
50.3
-0.1
1.9
58.58
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021830
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041819
186728579 - 186734930
6352